SpliceCenter | Tool name | SpliceCenter |
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| URL | http://projects.insilico.us/SpliceCenter/SpliceOverview.jsp |
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| Important features | 1)Displays gene splice variants and probe target locations for expression microarray platforms.A0 2)Provides a summary of splice variant coverage of multiple genes for common microarray platforms. A03)Provides high-througput analysis of peptide sequences indicating the splice variants that do / do not include the peptide.A0 |
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| Citations | Ryan MC, Zeeberg BR, Caplen NJ, Cleland JA, Kahn AB, Liu H, Weinstein JN. SpliceCenter: a suite of web-based bioinformatic applications for evaluating the
impact of alternative splicing on RT-PCR, RNAi, microarray, and peptIDe-based studies. BMC Bioinformatics. 2008 Jul 18;9:313. PubMed PMID: 18638396; PubMed Central PMCID: PMC2491637.
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| Year of publication | 2008 |
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| Rank by usage frequency | 100 |
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| Comments | 1) Gene information includes the chromosome number, strand, start, stop. 2) Peptide check displays the coding sequence for a peptide within splice variant of a gene. 3) Expression- check provides visualization of microarray expression data for a gene 4) Batch tools are also provided. |
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| Function | Exon detail, Exon detail: number, Exon detail: start/end, Exon detail: sequence, Exon detail indirect information, Graphical display of transcripts, Predicted protein sequences, Gene Information, Probe set details, Species, Finds alternative splicing in human, Finds alternative splicing in rat, Finds alternative splicing in mouse, Finds alternative splicing in Arabidopsis, Finds alternative splicing in Drosophila, Finds alternative splicing in other species |
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| Category | |
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| Input file format | Gene name |
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| Output file format | |
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| Limitation | |
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